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!DOCTYPE HTML PUBLIC -//W3C//DTD HTML 4.01 Transitional//EN>html>head>    meta http-equivContent-Type contenttext/html; charsetutf-8>  meta nameAuthor contentMauro J. Cavalcanti>  meta nameDescription contentA software package for quantitative analysis in Panbiogeography.>  meta nameKeywords contentpanbiogeography, track analysis, croizat, biodiversity, Python, GNU/Linux>   meta nameGENERATOR contentMicrosoft FrontPage Express 2.0>  title>Croizat/title>  link relstylesheet typetext/css hrefstylesheet.css>/head>body>p>a nameTOP>/a>/p>div styletext-align: center;>img stylewidth: 32px; height: 32px; alt srcimages/croizat.gif>/div>div idheader>h1 styletext-align: center;>Croizat/h1>br>h3 styletext-align: center;>A Software Package for Quantitative Analysis in Panbiogeography/h3>/div>div idnavigation>ul>  li>a href#Overview>Overview/a>/li>  li>a href#Features>Features/a>/li>  li>a href#Screenshots>Screenshots/a>/li>  li>a href#Download classactive>Download/a>/li>  li>a href#Lite>Lite Version/a>/li>  li>a href#Documentation>Documentation/a>/li>/ul>/div>div idnavigation>ul>  li>a href#Citation>Citation/a>/li>  li>a href#Application>Applications/a>/li>  li>a href#News>In the News/a>/li>  li>a href#Twitter>Twitter Updates/a>/li>  li>a href#Acknowledgements>Acknowledgements/a>/li>  li>a href#Contact>Contact/a>/li>/ul>/div>div idcontent>h1>a nameOverview>Overview/a>a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p styletext-align: justify;>strong>i>Croizat/i>/strong>is a free, user-friendly,cross-platform desktop software package which biologists can useto integrate and analyze spatial data on species or other taxaand to explore geographical patterns in diversity under apanbiogeographic and graph-theoretic approach. /p>p styletext-align: justify;>a hrefhttp://en.wikipedia.org/wiki/Panbiogeography>Panbiogeography/a>provides a method for analyzing the geographic structure ofdistributions in order to generate predictions about theevolution of species and other taxa in space and time. As oftoday, there is no standard, general-purpose software for theanalysis of distributional data under a panbiogeographicapproach. em>strong>Croizat/strong>/em>aims to solve that.It is based on the same database/analytical tools/map graphicsmodel of many a hrefhttp://en.wikipedia.org/wiki/Geographic_information_system>GeographicInformation Systems (GIS)/a>. It does not have all the featuresand functions of a GIS, but this makes it much easier to use. Yetunlike GISs, rather than concentrating on database and graphicsflexibility, em>strong>Croizat/strong>/em>is designed toperform specialized biological analyses, many of which are notreadily available from GISs./p>h1>a nameFeatures>Features/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>ul stylepadding: 20px 40px 0pt; typesquare>  li styletext-align: justify;>An easy-to-use,interactive a hrefhttp://en.wikipedia.org/wiki/Graphical_User_Interface>GraphicalUser Interface (GUI)/a>, with pulldown menus, dialog boxes, andother standard GUI controls, with almost identical look-and-feel onGNU/Linux, Microsoft Windows, and Apple Macintosh personal computers./li>  li styletext-align: justify;>Track analysis, withfastcomputing of individual tracks as minimum-spanning trees from adistance matrix among stations, as well as obtanining sets ofcompatible tracks (generalized tracks), using the a hrefhttp://code.google.com/p/martitracks/>MartiTracks/a>program which is automatically run under the hood./li>  li styletext-align: justify;>Data import ina variety of formats, including Excel and Calc spreadsheets, dBasefiles, tab- and comma-delimited text generated by all the majoronline biodiversity databases (a hrefhttp://www.gbif.org/>GBIF/a>,    a hrefhttps://www.idigbio.org/>iDigBio/a>, a hrefhttp://www.iobis.org/>OBIS/a>, a hrefhttp://www.vertnet.org/>VertNet/a>), aswell as standard GIS a hrefhttp://en.wikipedia.org/wiki/Shapefile>shapefiles/a>and a hrefhttp://earth.google.com/kml/>KML/a>files used by a hrefhttp://earth.google.com/>GoogleEarth/a>./li>  li styletext-align: justify;>Output of a hrefhttp://en.wikipedia.org/wiki/Shapefile>shapefiles/a>and a hrefhttp://earth.google.com/kml/>KML files/a>readable for mapdisplay with any Geographic Information System (a hrefhttp://www.diva-gis.org/>DIVA-GIS/a>, a hrefhttp://www.qgis.org/>QuantumGIS/a>, a hrefhttp://www.esri.com/software/arcgis>ArcGIS/a>)./li>  li styletext-align: justify;>Locality records aredisplayed as symbols (squares, circles, crosses, etc) on the map, withdifferent symbols for each species./li>  li styletext-align: justify;>Optional overlay ofsatellite imagery on maps, using a hrefhttp://en.wikipedia.org/wiki/Blue_Marble>NASA BlueMarble/a> images./li>  li styletext-align: justify;>Optional display ofrivers and country boundaries./li>  li styletext-align: justify;>Zoom in and out onareas of interest./li>  li styletext-align: justify;>Point, line and fillcolours can be set./li>  li styletext-align: justify;>Size, colour and typeof symbols can be set./li>  li styletext-align: justify;>Publication-qualitymaps, that can be saved as graphics files, or copied to the clipboardand pasted into other applications./li>/ul>p styletext-align: justify;>Additional features(as directseach and data retrieval from onlinebiodiversity databases and grid analysis for locating of mainmassings) will be included in future releases./p>p styletext-align: justify;>em>strong>Croizat/strong>/em>is written in a hrefhttp://www.python.org/>Python/a>,an interpreted,interactive, object-oriented programming language, coupled withthe portable, multi-platform a hrefhttps://www.qt.io/>Qt/a>interface management library, and other free external librariesalso written in Python and C/C++ (a hrefhttp://www.scipy.org/>Scipy/a>,a hrefhttp://numpy.org/>NumPy/a>, a hrefhttp://matplotlib.org/>Matplotlib/a>and its a hrefhttp://matplotlib.org/basemap/>Basemap/a>module). Therefore, theprogram is platform-independent, and runs withoutmodificationson any PC compatible with the x86 architecture, under GNU/Linux,Mac OS X, and MS-Windows./p>h1>a nameScreenshots>Screenshots/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p>Click on the images to enlarge./p>div aligncenter>center>table border0>/table>p aligncenter>br>/p>table stylewidth: 80%; text-align: left; margin-left: auto; margin-right: auto; border0 cellpadding2 cellspacing2>  tbody>    tr>      td>a hrefimages/mainscreen.jpg>img styleborder: 2px solid ; width: 256px; height: 143px; alt srcimages/mainscreen_small.jpg>/a>/td>      td styletext-align: center;>a hrefimages/bluemarble.jpg>img styleborder: 2px solid ; width: 256px; height: 143px; alt srcimages/bluemarble_small.jpg>/a>/td>    /tr>    tr>      td styletext-align: center;>small>em>strong>Croizat/strong>/em>main screen (default view)/small>/td>      td styletext-align: center;>small>em>strong>Croizat/strong>/em>main screen (using a hrefhttp://en.wikipedia.org/wiki/Blue_Marble>NASABlueMarble/a> image as map background)/small>/td>    /tr>    tr>      td>small> /small>      p aligncenter>small>em>strong>a hrefimages/parametersform.jpg>img styleborder: 2px solid ; width: 137px; height: 157px; alt srcimages/parametersform_small.jpg>/a>br>      /strong>/em>/small>/p>      /td>      td>small> /small>      p aligncenter>a hrefimages/zygo.jpg>img styleborder: 2px solid ; width: 200px; height: 150px; alt srcimages/zygo_small.jpg>/a>/p>      /td>    /tr>    tr>      td styletext-align: center;>small>em>strong>Croizat/strong>/em>em>/em>/span stylefont-style: italic;>MartiTracks/span> parameters dialog/small>/td>      td styletext-align: center;>small>Distribution of em>Zygodontomys/em>rodents in northern South America represented as a track graph computedby em>strong>Croizat/strong>/em>em> /em>(with satellite imagebackground)/small>/td>    /tr>  /tbody>/table>/center>/div>h1>a nameDownload>Download & Installation/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p styletext-align: justify;>Source code andbinary installaton packages are available from a hrefhttps://sourceforge.net/projects/croizat/files/>SourceForge/a>.There is no need to download external files and perform complicatedsystem configurations; everything needed is already included in theinstallation package. span stylefont-weight: bold;>Notice:/span>the binary installation package is available only for MS-Windows atthis time. /p>p styletext-align: justify;>To install the software,just download and execute the binary installation package. Theinstaller places a double-clickable executable in the Croizat folderinside your Program directory, together with the example ﬁles and thedocumentation. To start the program, simply double-click on theexecutable./p>p styletext-align: justify;>The software isdistributed as a hrefhttp://www.gnu.org/philosophy/free-sw.html>freesoftware/a>,under the a hrefhttp://www.gnu.org/copyleft/gpl.html>GNUGeneral Public License (GPL)/a>./p>h1>a nameLite>Lite Version/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p styletext-align: justify;>A lite version of thesoftware (span stylefont-weight: bold; font-style: italic;>CroizatReloaded/span>), with limited functionality, is also a hrefhttps://sourceforge.net/projects/croizat/files/lite>available/a>.It focuses on analysing data and generating output files, with allactual map display beingdone by means of a Geographic Information System (DIVA-GIS, QuantumGIS,ArcGIS, etc.)./p>h1>a nameDocumentation>Documentation & Support/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p styletext-align: justify;>The users guide for em>strong>Croizat/strong>/em> isincluded in the installation package and also available a hrefCroizat2%20User%20Guide.pdf>here/a>./p>p styletext-align: justify;>It is recommendable tojoin the a hrefhttp://groups.google.com.br/group/panbiog>strong>Panbiog-L/strong>/a>discussion list for discussions and exchanging questions aboutthe software, as well as to get information about updates andbugs./p>h1>a nameCitation>Citation/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p styletext-align: justify;>The correct citationsuggested for em>strong>Croizat/strong>/em>in technical and scientific publications is as follows:/p>p>a hrefhttp://www.uac.pt/%7Eseba/files/Biogeografia%204.pdf>Cavalcanti,M.J. 2009. Croizat: a software package for quantitative analysis inPanbiogeography. em>Biogeografía/em> strong>4/strong>:4-6./a>/p>h1>a nameApplication>Applications/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p>Scientific works which have used em>strong>Croizat/strong>/em>:/p>ol stylepadding: 20px 40px 0pt;>  li styletext-align: justify;>a hrefhttps://www.scielo.br/j/nau/a/ZT8t86JsjVRVb8tVy58NwMm/?langen>Santos-Silva, E. N., Brandorff, G.-O. and Cavalcanti, M. J. 2019. Distribution of European and African species of genus span stylefont-style: italic;>Diaptomus/span> (Copepoda: Calanoida: Diaptomidae): a track analysis. Nauplius span stylefont-weight: bold;>26/span>: e2018028./a>/li>  li styletext-align: justify;>a hrefhttp://tropicaldiversity.org/site/index.php/td/article/view/1>Cavalcanti, M. J., Lopes. P. R. D. and Sanos-Silva, E. N. 2019. Panbiogeographic analysis of the distribution patterns of the freshwater species of Sciaenidae (Actinopterygii: Perciformes) in the Amazon Basin. Tropical Diversity span stylefont-weight: bold;>1/span>(1): 5-11./a>/li>  li styletext-align: justify;>a hrefhttp://dx.doi.org/10.11646/zootaxa.3635.4.9>Cruzda Silva, E. L. 2013. Description of the male of span stylefont-style: italic;>Architis catuaba/span>Santos & Nogueira, 2008 and new records of span stylefont-style: italic;>Architis capricorna/span>Carico, 1981 (Araneae: Pisauridae). Zootaxa span stylefont-weight: bold;>3635/span>(4): 485–490./a>/li>  li styletext-align: justify;>a hrefhttp://www6.ufrgs.br/seerbio/ojs/index.php/rbb/article/view/1817>Moreira,G.R.P., Ferrari, A., Mondin, C. and Cervi, A. 2011. Panbiogeographicalanalysis of passion vines at their southern limit of distribution inthe Neotropics. em>Revista Brasileira de Biociências/em> strong>9/strong>:28-40./a>/li>  li styletext-align: justify;>Previatelli, D. 2010. span stylefont-style: italic;>Phylogenyand biogeography of Neotropical Diaptominae/span>. UnpublishedPhD Thesis, Instituto Nacional de Pesquisas da Amazônia, Manaus. 204p./li>/ol>h1>a nameNews>In the News/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>ul stylepadding: 20px 40px 0pt; typesquare>  li>a hrefhttp://www.conservation.org/newsroom/pressreleases/Pages/software_indentifies_key_areas.aspx>ConservationInternational Press Release/a>/li>  li>a hrefhttp://members.tripod.com/stewart_marshall/projects1.html>DistanceLearning in Developing Countries Project Overview/a>/li>  li>a hrefhttp://www.happynews.com/news/292009/croizat-maps-geographic-distribution-animals-plants.htm>HappyNews Notice/a>/li>/ul>h1>a nameTwitter>TwitterUpdates/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>ul idtwitter_update_list>/ul>p>a hrefhttps://twitter.com/croizat>img srcimages/twitter-gray.gif border0 height60 width80>/a>Be notified of updates to em>strong>Croizat/strong>/em>by a hrefhttps://twitter.com/croizat>following us onTwitter/a>./p>h1>a nameAcknowledgements>Acknowledgements/a>a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p styletext-align: justify;>Many people havecontributed to the development of em>strong>Croizat/strong>/em>:Brad McFall, Claudio Quezada, Daniel Previatelli, Douglas Riff,Edinaldo Nelson dos Santos-Silva, Gervásio Carvalho, Ian Henderson,John Grehan, Jonathan Liria. José Maria Cardoso da Silva, Juan Morrone,Maria Lucia Lorini, Michael Heads, Nicholas Matzke, Renato Bernils, RonaldoAlperin, Tania Escalante, and Valéria Gallo. Jeffrey Whitaker, Scott Sinclair, JohnHunter (span stylefont-style: italic;>in memoriam/span>), RyanMay, Stef Mientki, and Benjamin Root (members of the a hrefhttp://www.nabble.com/matplotlib---users-f2906.html>Matplotlib-users/a>mailing list) provided assistance and technical expertise.Special thanks to Robin Craw for encouragment and moral support.The development of Croizat has been funded by grants from a hrefhttp://www.conservation.org.br/>ConservationInternationalBrazil/a> (version 1.span stylefont-style: italic;>x/span>) and a hrefhttp://biotupe.org/>ProjetoBiotupé/a>, a hrefhttp://inpa.gov.br/>InstitutoNacional de Pesquisas da Amazônia/a> (version 2.span stylefont-style: italic;>x/span>)./p>h1>a nameContact>Contact/a> a href#TOP>img srcimages/upArrow.gif altback to top styleborder: 0px solid ; width: 16px; height: 16px; height16 width16>/a>/h1>p>a hrefmailto:maurobio@gmail.com>Mauro J.Cavalcanti/a>br>P.O. Box 18123br>CEP 20720-970br>Rio de Janeiro, RJ, BRAZILbr>Copyright © 2003-2021/p>table stylewidth: 100%; text-align: left; margin-left: auto; margin-right: auto;>  tbody>    tr>      td>      p>small>font color#ff0000>b>i>Lastupdated November 8, 2021/i>/b> /font>/small>/p>      /td>      td styletext-align: right;>small>Sponsored by /small>a hrefhttp://biotupe.org/>img styleborder: 0px solid ; width: 126px; height: 43px; alt srcimages/biotupe.gif>/a>/td>      td styletext-align: right;>      p>small>Hosted by /small>a hrefhttp://sourceforge.net/>img styleborder: 0px solid ; width: 140px; height: 42px; alt srcimages/sourceforge.png>/a>/p>      /td>    /tr>  /tbody>/table>br>Contribute with a donation and help to keep alive the development of em>strong>Croizat/strong>/em>.Donations can be made with credit card, using a hrefwww.paypal.com>PayPal/a>.br>br>center>form actionhttps://www.paypal.com/cgi-bin/webscr methodpost target_top>input namecmd value_s-xclick typehidden>input namehosted_button_id valueU4WEUX9S4CST2 typehidden>input srchttps://www.paypalobjects.com/en_US/i/btn/btn_donateCC_LG.gif namesubmit altPayPal - The safer, easier way to pay online! border0 typeimage> img alt srchttps://www.paypalobjects.com/pt_BR/i/scr/pixel.gif border0 height1 width1>/form>/center>/div>/body>/html>

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